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Genbank Reformat prepares Genbank files to be used in SPINE or AGEnt. Performs a number of functions:

  • 1: Joins multi-part sequences (i.e. contigs or chromosomes / plasmids) into a single sequence. This is no longer necessary for Spine or AGEnt. You can leave the setting as 'No'.
  • 2: Adds locus_tag tags to features where they were not included (i.e. as output by RAST).
    WARNING: Genbank files that already have locus_tag tags on any features will not have any new tags added.
  • 3: Orders features by coordinates rather than by feature type. Again, RAST does this.

    • Genbank File:


    Please join records in separate files into a single file before uploading.

    Options:

    Join contigs into a single sequence?
    Number of N's separating joined sequences (if requested, ignored if above is 'No'):
    Joined sequence ID (if requested, ignored if above is 'No'):
    Add locus_tag? Locus ID prefix:


    Email Egon with questions or bugs.